K-SSM v3: Kuramoto oscillators in a state-space LM. Positive result: bistability drives R to 0.99. Negative result: text generation remains incoherent. Full data, honest assessment.
PyTorch implementation of the bistable recurrent cell (BRC) and recurrently neuromodulated bistable recurrent cell (nBRC)
Nonlinear MetaMaterials MPI solver
PyTorch implementation of the (neuromodulated) bistable recurrent cell
Code and data for our paper on Bistability and Affect Shifts in the Prediction of Psychological Well-being
Code for the paper "Bistability in Type I Toxin-Antitoxin Systems May Lead to Stress-Induced Persister Formation" by Sofija Markovic, Magdalena Djordjevic, Hong-Yu OU, and Marko Djordjevic.
Coursework repository for Practical Systems Biology — includes Python-based models of gene regulatory networks, toggle switches, repressilators, and ribosome regulation under antibiotic stress.
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