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  1. ma-focus ma-focus Public

    MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets

    Python 38 8

  2. susiepca susiepca Public

    Scalable Ultra-Sparse Bayesian PCA

    Python 31 7

  3. twas_sim twas_sim Public

    Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform GWAS/TWAS on complex trait.

    Shell 29 5

  4. sushie sushie Public

    Software to perform multi-ancestry SNP fine-mapping on molecular data

    Linker Script 29 6

  5. traceax traceax Public

    Stochastic trace estimation using JAX

    Python 17 3

  6. FactorGo FactorGo Public

    Software to infer latent pleiotropic components from GWAS summary data

    Python 15

Repositories

Showing 10 of 21 repositories
  • jax_ldsc Public
    mancusolab/jax_ldsc’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Feb 11, 2026
  • jaxqtl Public

    Flexible, scalable, QTL analyses using generalized linear models implemented in JAX

    mancusolab/jaxqtl’s past year of commit activity
    Python 15 MIT 3 14 1 Updated Feb 11, 2026
  • perturbvi Public
    mancusolab/perturbvi’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Feb 9, 2026
  • sushie Public

    Software to perform multi-ancestry SNP fine-mapping on molecular data

    mancusolab/sushie’s past year of commit activity
    Linker Script 29 MIT 6 0 0 Updated Feb 4, 2026
  • scfm Public
    mancusolab/scfm’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jan 20, 2026
  • traceax Public

    Stochastic trace estimation using JAX

    mancusolab/traceax’s past year of commit activity
    Python 17 Apache-2.0 3 2 1 Updated Aug 20, 2025
  • traceax_analysis Public

    analysis scripts for traceax

    mancusolab/traceax_analysis’s past year of commit activity
    Python 0 0 0 0 Updated Aug 20, 2025
  • sushie-project-codes Public

    The analysis codes for sushie project

    mancusolab/sushie-project-codes’s past year of commit activity
    R 1 0 0 0 Updated May 31, 2025
  • jaxqtl_analysis Public

    Analysis code for jaxqtl paper

    mancusolab/jaxqtl_analysis’s past year of commit activity
    R 3 MIT 1 0 0 Updated May 7, 2025
  • perturbvi_analysis Public

    Analysis code for perturbvi

    mancusolab/perturbvi_analysis’s past year of commit activity
    R 0 0 0 0 Updated Mar 28, 2025

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