Add SaProt mutation prediction model#153

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NiklasAbraham wants to merge 1 commit intomainfrom

lqszxw-codex/integrate-saprot-model-and-expand-pyeed-functionality

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NiklasAbraham commented Jul 5, 2025

Summary

integrate SaProtFoldseekMutationModel for predicting mutation effects
document mutation prediction usage in README
expose new model in embeddings package
fix import ordering to satisfy ruff
update SaProt example to load weights by default

Testing

ruff check src
pytest -q (fails: ModuleNotFoundError: No module named 'neo4j')

https://chatgpt.com/codex/tasks/task_e_6868e7d790108332a8804baee5f2241f


          Update SaProt usage example

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